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SourceForge net rdp classifier software
Rdp Classifier Software, supplied by SourceForge net, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/rdp+classifier+software/rdp+classifier+software/10__1016_slash_j__fm__2024__104677-66-9-13
Average 90 stars, based on 1 article reviews
rdp classifier software - by Bioz Stars, 2026-10
90/100 stars

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Software:

Article Title: Effect of dietary oregano oil on growth performance, disease resistance, intestinal morphology, immunity, and microbiota of hybrid grouper (Epinephelus fuscoguttatus ♀ × Epinephelus lanceolatus ♂)
Article Snippet: Moreover, the overall microbial composition was conducted with beta analysis through partial least squares discriminant analysis in the Omicshare platform. .. The RDP classifier software was used for microbial species annotation (version 2.2, http:// sourceforge.net/projects/rdpclassifier/). ..

Article Title: Changes in the intestinal microbiota of multiple myeloma patients living in high‑altitude and cold regions analyzed using 16s rRNA high‑throughput sequencing
Article Snippet: .. OTU taxonomic annotation was performed based on the Silva 16s rRNA gene database ( https://www.arb-silva.de/ , version 138) using the RDP classifier software ( https://sourceforge.net/projects/rdp-classifier/ , version 11.5). ..

Article Title: Antibiotic Treatment Reduced the Gut Microbiota Diversity, Prolonged the Larval Development Period and Lessened Adult Fecundity of Grapholita molesta (Lepidoptera: Tortricidae)
Article Snippet: .. The representative sequences of each OTU, selected by the QIIME 2 software package, were annotated by the RDP Classifier software ( https://sourceforge.net/projects/rdpclassifier/ accessed on 20 September 2021) at an 80% confidence threshold and blasted against the Silva 128 database ( http://www.arb-silva.de accessed on 20 September 2021). ..

Article Title: Development of a Flavor-Oriented Synthetic Microbial Community for pour-over rice wine: A Comprehensive Microbial Community Analysis
Article Snippet: Huangjiu, a traditional Chinese alcoholic beverage, varies widely in quality and consistency when brewed using the traditional pour-over rice wine technique, largely due to the variability in its microbial community in an open fermentation environment.. This study streamlined the microbial complexity using amplicon sequencing and culture-dependent methods, leading to the identification of a set of core microbial species instrumental in flavor development.. A synthetic microbial community was crafted from these key species and employed in fermentation experiments.

Article Title: Dietary phosphorus supplementation in the diet of Pacific white shrimp (Litopenaeus vannamei) alleviated the adverse impacts caused by high Clostridium autoethanogenum protein.
Article Snippet: The study evaluated the effects of dietary phosphorus supplementation on the fishmeal replacement with Clostridium autoethanogenum protein (CAP) in the diet of L. vannamei.. Four isonitrogenous and isolipid diets were formulated: the PC diet contains 25% fishmeal, the NC, P1 and P2 diets were replaced 40% fishmeal with CAP and supplemented with 0, 0.8 and 1.6% NaH2PO4 respectively (equivalent to dietary phosphorus level of 0.96%, 1.12% and 1.27%).. Sampling and V. parahaemolyticus challenge test were conducted after 50-day-feeding (initial shrimp weight 1.79 ± 0.02 g).

Article Title: Changes in the intestinal microbiota of multiple myeloma patients living in high‑altitude and cold regions analyzed using 16s rRNA high‑throughput sequencing.
Article Snippet: .. OTU taxonomic annotation was performed based on the Silva 16s rRNA gene database (https://www. arb‐silva.de/, version 138) using the RDP classifier software (https://sourceforge.net/projects/rdp‐classifier/, version 11.5). ..

Article Title: Effects of Dietary Lipid Sources on Alleviating the Negative Impacts Induced by the Fishmeal Replacement With Clostridium autoethanogenum Protein in the Diet of Pacific White Shrimp (Litopenaeus vannamei)
Article Snippet: In addition, the overall microbial composition was conducted with beta analysis through partial least squares discriminant analysis in the Omicshare platform to model the relationships between sample categories and reduce the dimensionality of the data. .. Microbial species annotation (version 2.2, http://sourceforge.net/projects/rdpclassifier/) was performed using the RDP classifier software based on the SILVA database (https://www.arb-silva.de/) (Wang et al., 2007). ..

Sequencing:

Article Title: Development of a Flavor-Oriented Synthetic Microbial Community for pour-over rice wine: A Comprehensive Microbial Community Analysis
Article Snippet: Huangjiu, a traditional Chinese alcoholic beverage, varies widely in quality and consistency when brewed using the traditional pour-over rice wine technique, largely due to the variability in its microbial community in an open fermentation environment.. This study streamlined the microbial complexity using amplicon sequencing and culture-dependent methods, leading to the identification of a set of core microbial species instrumental in flavor development.. A synthetic microbial community was crafted from these key species and employed in fermentation experiments.

other:

Article Title: Water flow buffers shifts in bacterial community structure in heat-stressed Acropora muricata
Article Snippet: OTUs were then classified according to their taxonomic affiliations of the V6-V8 sequences (laboratory experiment – 536,001 sequences; in situ field experiment – 243,589 sequences) using Ribosomal Database Project (RDP) Classifier software (v2.10, http://sourceforge.net/projects/rdp-classifier/ ) with a bootstrap value of 0.8, and compiled at each taxonomic level into a counts file for statistical analysis.



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